Index

_

__getitem__() (sispca.data.SISPCADataset method) (sispca.SISPCADataset method) __len__() (sispca.data.SISPCADataset method) (sispca.SISPCADataset method) _calc_kernel() (sispca.data.Supervision method) (sispca.Supervision method) _data (sispca.model.PCA attribute) _dataset (sispca.model.SISPCA attribute) (sispca.SISPCA attribute) _extract_batch_inputs() (sispca.model.SISPCA method) (sispca.SISPCA method) _get_U_subspace_list() (sispca.model.SISPCA method) (sispca.SISPCA method)

_model_summary_string (sispca.hcv_vi.HCVI attribute) _module_cls (sispca.hcv_vi.HCVI attribute) _rank (sispca.utils.Kernel attribute) _reorthogonalize_U() (sispca.model.SISPCA method) (sispca.SISPCA method) _sanity_check() (sispca.data.Supervision method) (sispca.hcv_vi.SupervisionAnnData method) (sispca.Supervision method) (sispca.utils.Kernel method) _shape() (sispca.utils.Kernel method) _target_kernel_K (sispca.data.Supervision attribute) (sispca.Supervision attribute) _target_kernel_Q (sispca.data.Supervision attribute) (sispca.Supervision attribute)

A

automatic_optimization (sispca.model.PCA attribute) (sispca.model.SISPCA attribute) (sispca.SISPCA attribute)

C

configure_optimizers() (sispca.model.PCA method) (sispca.model.SISPCA method) (sispca.SISPCA method)

create_affinity_matrix() (sispca.model.SISPCAAuto method) (sispca.SISPCAAuto method)

D

dataset (sispca.model.SISPCAAuto attribute) (sispca.SISPCAAuto attribute)

delta_kernel() (in module sispca.utils)

F

field_type (sispca.hcv_vi.SupervisionAnnData attribute) find_best_update_order() (sispca.model.SISPCAAuto method) (sispca.SISPCAAuto method) find_spectral_lambdas() (sispca.model.SISPCAAuto method) (sispca.SISPCAAuto method)

fit() (sispca.model.SISPCA method) (sispca.model.SISPCAAuto method) (sispca.SISPCA method) (sispca.SISPCAAuto method) forward() (sispca.model.PCA method)

G

gaussian_kernel() (in module sispca.utils) gene_likelihood (sispca.hcv_vi.HCV attribute) generative() (sispca.hcv_vi.HCV method) get_latent_representation() (sispca.model.SISPCA method) (sispca.model.SISPCAAuto method) (sispca.SISPCA method) (sispca.SISPCAAuto method)

gram_schmidt() (in module sispca.utils)

H

HCV (class in sispca.hcv_vi) HCVI (class in sispca.hcv_vi)

hsic_gaussian() (in module sispca.utils) hsic_linear() (in module sispca.utils) hsic_scale (sispca.hcv_vi.HCV attribute)

I

init_params_ (sispca.hcv_vi.HCVI attribute)

K

Kernel (class in sispca.utils) kernel_subspace (sispca.model.SISPCA attribute) (sispca.SISPCA attribute)

kwargs (sispca.model.SISPCAAuto attribute) (sispca.SISPCAAuto attribute)

L

lambda_contrast (sispca.model.SISPCA attribute) (sispca.SISPCA attribute) lambda_contrast_list (sispca.model.SISPCAAuto attribute) (sispca.SISPCAAuto attribute) loss() (sispca.hcv_vi.HCV method) (sispca.model.PCA method) (sispca.model.SISPCA method) (sispca.SISPCA method)

loss_history (sispca.model.LossHistoryCallback attribute) LossHistoryCallback (class in sispca.model) lr (sispca.model.PCA attribute) (sispca.model.SISPCA attribute) (sispca.SISPCA attribute)

M

max_log_lambda_c (sispca.model.SISPCAAuto attribute) (sispca.SISPCAAuto attribute) models (sispca.model.SISPCAAuto attribute) (sispca.SISPCAAuto attribute) module sispca sispca.data sispca.hcv_vi sispca.model sispca.utils

module (sispca.hcv_vi.HCVI attribute)

N

n_feature (sispca.data.SISPCADataset attribute) (sispca.model.PCA attribute) (sispca.SISPCADataset attribute) n_lambda (sispca.model.SISPCAAuto attribute) (sispca.SISPCAAuto attribute) n_lambda_clu (sispca.model.SISPCAAuto attribute) (sispca.SISPCAAuto attribute) n_latent (sispca.model.PCA attribute) n_latent_sub (sispca.hcv_vi.HCV attribute) (sispca.hcv_vi.HCVI attribute) (sispca.model.SISPCA attribute) (sispca.model.SISPCAAuto attribute) (sispca.SISPCA attribute) (sispca.SISPCAAuto attribute) n_sample (sispca.data.SISPCADataset attribute) (sispca.data.Supervision attribute) (sispca.model.SISPCA attribute) (sispca.SISPCA attribute) (sispca.SISPCADataset attribute) (sispca.Supervision attribute)

n_subspace (sispca.hcv_vi.HCV attribute) (sispca.hcv_vi.HCVI attribute) (sispca.model.SISPCA attribute) (sispca.model.SISPCAAuto attribute) (sispca.SISPCA attribute) (sispca.SISPCAAuto attribute) n_target (sispca.data.SISPCADataset attribute) (sispca.hcv_vi.HCVI attribute) (sispca.model.SISPCA attribute) (sispca.SISPCA attribute) (sispca.SISPCADataset attribute) normalize_col() (in module sispca.utils)

O

on_train_batch_end() (sispca.model.LossHistoryCallback method) on_train_epoch_end() (sispca.model.LossHistoryCallback method) (sispca.model.SISPCA method) (sispca.SISPCA method)

P

PCA (class in sispca.model) predict() (sispca.hcv_vi.HCV method)

predict_target_from_latent_sub (sispca.hcv_vi.HCV attribute) (sispca.hcv_vi.HCVI attribute) prediction_loss() (sispca.hcv_vi.HCV method)

Q

Q (sispca.utils.Kernel attribute)

R

rank() (sispca.utils.Kernel method)

realization() (sispca.utils.Kernel method)

S

semisupervised_history_ (sispca.hcv_vi.HCVI attribute) setup_anndata() (sispca.hcv_vi.HCVI class method) shape (sispca.utils.Kernel attribute) sispca module SISPCA (class in sispca) (class in sispca.model) sispca.data module sispca.hcv_vi module sispca.model module

sispca.utils module SISPCAAuto (class in sispca) (class in sispca.model) SISPCADataset (class in sispca) (class in sispca.data) slice_sparse_matrix() (in module sispca.utils) subset() (sispca.utils.Kernel method) Supervision (class in sispca) (class in sispca.data) SupervisionAnnData (class in sispca.hcv_vi)

T

target_data (sispca.data.Supervision attribute) (sispca.Supervision attribute) target_data_list (sispca.data.SISPCADataset attribute) (sispca.SISPCADataset attribute) target_kernel (sispca.data.Supervision attribute) (sispca.Supervision attribute) (sispca.utils.Kernel attribute) target_kernel_list (sispca.data.SISPCADataset attribute) (sispca.model.SISPCA attribute) (sispca.SISPCA attribute) (sispca.SISPCADataset attribute) target_key (sispca.hcv_vi.SupervisionAnnData attribute) target_key_and_type (sispca.hcv_vi.HCVI attribute) target_n_dim (sispca.hcv_vi.SupervisionAnnData attribute) target_name (sispca.data.Supervision attribute) (sispca.Supervision attribute) target_name_list (sispca.data.SISPCADataset attribute) (sispca.model.SISPCA attribute) (sispca.SISPCA attribute) (sispca.SISPCADataset attribute)

target_sdim_list (sispca.model.SISPCAAuto attribute) (sispca.SISPCAAuto attribute) target_supervision_list (sispca.data.SISPCADataset attribute) (sispca.hcv_vi.HCV attribute) (sispca.SISPCADataset attribute) target_type (sispca.data.Supervision attribute) (sispca.hcv_vi.SupervisionAnnData attribute) (sispca.Supervision attribute) (sispca.utils.Kernel attribute) tr_cov() (in module sispca.utils) train() (sispca.hcv_vi.HCVI method) training_step() (sispca.model.PCA method) (sispca.model.SISPCA method) (sispca.SISPCA method)

U

U (sispca.model.PCA attribute) (sispca.model.SISPCA attribute) (sispca.SISPCA attribute)

unsupervised_history_ (sispca.hcv_vi.HCVI attribute)

W

was_pretrained (sispca.hcv_vi.HCVI attribute)

X

x (sispca.data.SISPCADataset attribute) (sispca.SISPCADataset attribute)

xtKx() (sispca.utils.Kernel method)